BioHPC OnDemand
BioHPC OnDemand is a new service from BioHPC, providing easy one-click access to web-based scientific applications from the BioHPC Portal, which will run on the powerful compute or GPU nodes of our Nucleus cluster. There's no need to install software on your laptop or desktop and struggle with large datasets. Launch a session from the portal and analyze your data faster with BioHPC.
DIGITS from NVIDIA is a web-based platform allowing BioHPC users to easily harness the power of modern deep learning toolkits, including Caffe, Torch, and Tensorflow. DIGITS provides a web interface to upload and explore datasets; define, train, and test models; interactively examine predictions. DIGITS can use mult-GPUs and allows easy setup of jobs with different parameters, minimizing coding so that you can concentrate on your applying deep learning to your data.
Jupyter - Interactive Notebooks
The Jupyter project provides web-based notebooks for interactive coding in many languages, including Python, R, and Julia. Create beautiful notebooks incorporating code, plots, tables, and documentation.
BisQue is a free, open source web-based platform for the exchange and exploration of large, complex datasets. BisQue was developed for the exchange and exploration of biological images, and it enables researchers to store, visualize, organize and analyze images in the cloud.
RStudio is a free and open-source integrated development environment for R, a programming language for statistical computing and graphics.
CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines. CryoSPARC combines powerful innovations in 3D reconstruction algorithms with specially designed software to provide a streamlined end-to-end single particle cryo-EM workflow. Rapidly solve high-resolution structures of biologically important targets, with advanced tools for membrane proteins, heterogeneous samples, and flexible molecules. Process 3D refinements in minutes on GPU.
NVIDIA Clara is a healthcare application framework for AI-powered imaging, genomics, and the development and deployment of smart sensors. It includes full-stack GPU-accelerated libraries, SDKs, and reference applications for developers, data scientists, and researchers to create real-time, secure, and scalable solutions.