BioHPC Training Sessions 2021

BioHPC training sessions used to take place each Wednesday, at 10:30 am until 12:00 pm in seminar room NL6.125.

•   1st Wed of each month -  New user training* [Mandatory for new users]
•   HPC & Computer Science topics
•   Bioinformatics / HPC User Showcase

Have coffee with the BioHPC: During some months we will host Coffee with BioHPC - an informal forum for users to discuss projects or questions with BioHPC staff and others. Coffee and light snacks provided.

*Training is now mandatory for new users. Users applying for a new BioHPC account must attend the new user training session, offered monthly, before receiving full access to BioHPC systems. Prior to the training new users should register for an account online, via https://portal.biohpc.swmed.edu/accounts/register/. Initial access to the BioHPC web portal will be limited, permitting new users to review guides and training materials. After the new user attends the mandatory training, full login and storage access to BioHPC systems will be granted.

Notes during COVID-19: Some training schedule may be different from the training calendar. All training will be online through Microsoft Teams. Please pay attention to the BioHPC training notification, usually send on every Monday, which will include instructions on how to join on Microsoft Teams.  


 

Date Type Session Name
1/6/2021 Intro Intro to BioHPC
1/13/2021 CS/HPC Intro to Python
1/20/2021 Showcase HPC BioHPC Cloud Storage
1/27/2021 Showcase Bioinformatics Astrocyte
2/3/2021 Intro Intro to BioHPC
2/10/2021 CS/HPC Intro to Linux I
2/17/2021 CS/HPC Intro to Linux II
2/24/2021 CS/HPC Intro to Linux III
3/3/2021 Intro Intro to BioHPC
3/10/2021 CS/HPC Julia
3/17/2021 CS/HPC Reproducible development environment
3/24/2021 Showcase Bioinformatics Efficient storage solutions: data compression and migration
3/31/2021 No training Memorial Day
4/7/2021 Intro Intro to BioHPC
4/14/2021 CS/HPC SLURM
4/21/2021 CS/HPC Singularity
4/28/2021 Showcase Bioinformatics Datahandling with R
5/5/2021 Intro Intro to BioHPC
5/12/2021 CS/HPC Spark
5/19/2021 CS/HPC Jupyter Notebook
5/26/2021 Showcase Bioinformatics Drugui
6/2/2021 Intro Intro to BioHPC
6/9/2021 CS/HPC Workstations and Thin client
6/16/2021 Showcase HPC Parallel MATLAB
6/23/2021 Showcase Bioinformatics CADD
6/30/2021 Coffee Coffee
7/7/2021 Intro Intro to BioHPC
7/14/2021 CS/HPC Data Visualization
7/21/2021 CS/HPC Relion
7/28/2021 Showcase BICF TBD
8/4/2021 Intro Intro to BioHPC
8/11/2021 CS/HPC Git and GitLAb
8/18/2021 CS/HPC Machine Learning using R
8/25/2021 Showcase Bioinformatics Image processing with MATLAB
9/1/2021 Intro Intro to BioHPC
9/8/2021 CS/HPC Param Runner
9/15/2021 Showcase Bioinformatics AlphaFold: Google DeepMind protein structure prediction
9/22/2021 Showcase BICF

TBD

9/29/2021 Coffee Coffee
10/6/2021 Intro Intro to BioHPC
10/13/2021 CS/HPC ImageJ
10/20/2021 CS/HPC SW install (EasyBuild, conda, pip, source)
10/27/2021 Showcase Bioinformatics Deep Learning
11/3/2021 Intro Intro to BioHPC
11/10/2021 CS/HPC GitLab CI/CD
11/17/2021 CS/HPC cryoSPARC
11/24/2021 Showcase BICF TBD
12/1/2021 Intro Intro to BioHPC
12/8/2021 CS/HPC Parallel R
12/15/2021 CS/HPC Image processing using python
12/22/2021 No training Happy Holidays!
12/29/2021 No training Happy Holidays!

Please direct any queries to biohpc-help@utsouthwestern.edu .