BioHPC Training Sessions 2019
BioHPC training sessions will take place each Wednesday, at 10:30 am until 12:00 pm in seminar room NL6.125.
• 1st Wed of each month - New user training* [Mandatory for new users]
• 2nd & 3rd Wed of each month -HPC & Computer Science topics
• 4th Wed of each month - Bioinformatics / HPC User Showcase
5th Wed of Jan/May/Aug/Oct - Have coffee with the BioHPC: On months with a 5th Wednesday we will host Coffee with BioHPC - an informal forum for users to discuss projects or questions with BioHPC staff and others. Coffee and light snacks provided.
*Training is now mandatory for new users. Users applying for a new BioHPC account must attend the new user training session, offered monthly, before receiving full access to BioHPC systems. Prior to the training new users should register for an account online, via . Initial access to the BioHPC web portal will be limited, permitting new users to review guides and training materials. After the new user attends the mandatory training, full login and storage access to BioHPC systems will be granted.
| Date | Type | Session Name |
| 01/02/2019 | Intro | Introduction to BioHPC |
| 01/09/2019 | CS/HPC | Git on BioHPC |
| 01/16/2019 | CS/HPC | Parallel MATLAB on BioHPC |
| 01/23/2019 | Showcase BICF | UCSC Genome Browser and Encode Data Download |
| 01/30/2019 | Coffee | Coffee with BioHPC |
| 02/06/2019 | Intro | Introduction to BioHPC |
| 02/13/2019 | CS/HPC | Basics of Linux I - File Navigation, Operations, Permissions |
| 02/20/2019 | CS/HPC | Basics of Linux II - Piping, Text Manipulation, Awk, Sed |
| 02/27/2019 | CS/HPC | Basics of Linux III - Shell Scripting |
| 03/06/2019 | Intro | Introduction to BioHPC |
| 03/13/2019 | CS/HPC | Cloud and On-Demand Services on the BioHPC |
| 03/20/2019 | CS/HPC | Big Data Visualization |
| 03/27/2019 | Showcase HPC | Seurat on-Demand |
| 04/03/2019 | Intro | Introduction to BioHPC |
| 04/10/2019 | CS/HPC | Singularity Containers |
| 04/17/2019 | CS/HPC | OpenMP at a Glance |
| 04/24/2019 | Showcase BICF | Astrocyte Workflows on the BioHPC |
| 05/01/2019 | Intro | Introduction to BioHPC |
| 05/08/2019 | CS/HPC | BioHPC Storage, Backup, and File Sharing |
| 05/15/2019 | CS/HPC | Jupyter Notebook and JupyterLab |
| 05/22/2019 | Showcase BICF | TCGA |
| 05/29/2019 | Coffee | Coffee with BioHPC |
| 06/05/2019 | Intro | Introduction to BioHPC |
| 06/12/2019 | CS/HPC | BioHPC Essential Hints and Tips for Power Users |
| 06/19/2019 | CS/HPC | Parallel R/R |
| 06/26/2019 | Showcase HPC | Cuda Programming on the GPU |
| 07/03/2019 | Intro | Introduction to BioHPC |
| 07/10/2019 | CS/HPC | GNUPlot |
| 07/17/2019 | CS/HPC | Mpi4py: Distributed Computing with Python |
| 07/24/2019 | Showcase BICF | Machine Learning |
| 07/31/2019 | Coffee | Coffee with BioHPC |
| 08/07/2019 | Intro | Introduction to BioHPC |
| 08/14/2019 | CS/HPC | Collaborative Software Development with GitLab |
| 08/21/2019 | CS/HPC | Monitoring and Optimizing Workflows |
| 08/28/2019 | Showcase HPC | Deep Learning with Keras |
| 09/04/2019 | Intro | Introduction to BioHPC |
| 09/11/2019 | CS/HPC | Basics of Linux I - File Navigation, Operations, Permissions |
| 09/18/2019 | CS/HPC | Basics of Linux II - Piping, Text Manipulation, Awk, Sed |
| 09/25/2019 | CS/HPC | Basics of Linux III - Shell Scripting |
| 10/02/2019 | Intro | Introduction to BioHPC |
| 10/09/2019 | CS/HPC | Using the SLURM Job Scheduler |
| 10/16/2019 | CS/HPC | Parallel Python |
| 10/23/2019 | Showcase BICF | Single Cell RNASeq |
| 10/30/2019 | Coffee | Coffee with BioHPC |
| 11/06/2019 | Intro | Introduction to BioHPC |
| 11/13/2019 | CS/HPC | OpenACC - Parallelizing Code across the CPU and GPU |
| 11/20/2019 | Showcase HPC | Medical Image Processing with ImageJ and SimpleITK |
| 11/27/2019 | No Training -- Happy Thanksgiving! | |
| 12/04/2019 | Intro | Introduction to BioHPC |
| 12/11/2019 | CS/HPC | Future Developments in BioHPC |
| 12/18/2019 | Showcase HPC | TBD |
| 12/25/2019 | No Training -- Happy Holidays! |
Please direct any queries to biohpc-help@utsouthwestern.edu .